№ files_lp_3_process_9_68584
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This dataset includes water quality and microbial source tracking measurements from urban stormwater and stream samples collected in Washington, D.C., focusing on antibiotic resistance genes and microbial contamination.
Year:
2019-2020
Region / City:
District of Columbia, USA
Theme:
Urban water quality, antibiotic resistance
Document Type:
Dataset
Institution:
U.S. Environmental Protection Agency (EPA)
Author:
Orin Shanks
Target Audience:
Researchers, environmental scientists
Sampling Period:
November 25, 2019 - November 30, 2020
Approval Date:
Approved for release
Sampling Events:
31
Total Samples:
124
Precipitation Measurement:
WH24B Wireless Weather Station
Quality Control Samples:
3,743
Price: 8 / 10 USD
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Course Code:
MCB 424
Term:
Spring 2024
Credits:
3 Credit Hours
Instructor:
William Metcalf
Instructor Email:
[email protected]
Instructor Office:
B415 CLSL
Instructor Office Hours:
Mondays 4:00 – 5:00 PM, or by appointment
Teaching Assistant:
Divyanshi
TA Email:
[email protected]
TA Office:
Learning Center, Burrill Hall
TA Office Hours:
Wednesdays 8:50 – 9:50, or by appointment
Class Schedule:
Monday, Wednesday, Friday 10:00 – 10:50 PM
Classroom:
140 Burrill Hall
Prerequisites:
MCB 250 and MCB 354 or MCB 450, or consent of instructor
Course Text:
The physiology and biochemistry of prokaryotes by David White
Other Texts:
Biology of the Prokaryotes, Bacterial Metabolism
Course Website:
http://www.life.illinois.edu/mcb/424
Grading:
Option I (400 points) or Option II (600 points)
Assessments:
3 Exams, 6 Problem Sets, 1 Quiz, Muddiest Points, Final Exam (optional)
Problem Set Deadlines:
February 2, February 14, March 6, March 26, April 10, April 26
Exams:
February 16, March 27, April 29
Optional Final Exam:
May 10, 1:30–4:30 PM
Policies:
MCB Curriculum Policies, Religious Observances, Late Add, Contacting Course Personnel
Learning Outcomes:
Understanding microbial metabolism, energy conservation, adaptation to environments, predicting metabolic pathways
Target Audience:
Undergraduate students in Molecular & Cellular Biology
Research Theme:
Microbiology; Synthetic biology
PhD Research Project Title:
Genome-guided discovery of novel microbial enzymes and natural products
Scholarship category:
SBS Research Student Scholarship
Principal Investigator:
Liang Zhao-Xun
Co-supervisor/Collaborator:
NA
Proposed work:
Microbial genomics, Bioinformatics, Enzyme discovery, Functional characterization, Genetic manipulation, Synthetic biology
Preferred skills:
Basic understanding of biochemistry and molecular cloning
Application contact:
[email protected]
Application portal:
https://venus.wis.ntu.edu.sg/GOAL/OnlineApplicationModule/frmOnlineApplication.ASPX
Year:
2023
Region / city:
Northern Arizona
Subject:
Genetics, Microbial Research
Document Type:
Protocol
Institution:
Northern Arizona University, College of Engineering, Forestry and Natural Sciences, School of Forestry and Center for Microbial Genetics and Genomics
Author:
Northern Arizona University
Target Audience:
Researchers in microbial genetics, field biologists
Period of validity:
N/A
Approval Date:
N/A
Modification Date:
N/A
Context:
Protocol for collecting guano samples for genetic analysis, detailing materials and procedures for field sampling and preservation.
Year:
2021
Region / City:
Hainan, China
Subject:
Microbial ecology, agriculture
Document Type:
Research Article
Organization / Institution:
Hainan University
Author:
Manman Zhang, Rui Wang, Raja Asad Ali Khan, Xin Zhan, Sen Ren, Haonan Jiang, Yinggu Wu, Fanxing Yang, Xiaoli Yu, Tong Liu
Target Audience:
Researchers, Agricultural Scientists
Period of Effect:
Not specified
Approval Date:
Not specified
Date of Changes:
Not specified
Advertised Job Title:
Postdoctoral Fellowship – Microbial Ecology of Coastal Environments
Reference Number:
43884
Classification:
CSOF4
Salary Range:
AU $80K to AU $91K plus up to 15.4% superannuation
Location:
Clayton, Victoria Australia
Tenure:
Specified Term of 3 years
Relocation assistance:
Provided to the successful candidate if required
Applications are open to:
All Candidates
Functional Area:
Research Scientist / Engineer - Postdoc
Reports to:
Team Leader Environmental Genomics
Number of Direct Reports:
0
Organisational Unit:
Environmental Genomics Team, CSIRO Oceans and Atmosphere
Organisation:
CSIRO
Field of Research:
Microbial Ecology, Environmental Genomics, Marine Biogeochemistry
Project Focus:
Microbial community composition and biogeochemical processes in estuarine sediments
Key Responsibilities:
Independent research, field sampling, molecular analyses, data analysis, publication and conference presentation
Required Qualification:
PhD in a relevant discipline such as Microbial/Molecular Ecology
Experience Requirement:
Maximum 3 years relevant postdoctoral experience
Employment Type:
Full-time Postdoctoral Fellowship
Training Program:
CSIRO Postdoctoral Training Program including discipline-specific techniques, professional development, project management and communication skills
Year:
2019
Region / city:
Wendelsheim, Germany
Topic:
Celiac disease, food additives, microbial transglutaminase
Document type:
Letter to the editor
Organization / institution:
AESKU.KIPP Institute
Authors:
Aaron Lerner, Torsten Matthias
Target audience:
Researchers, healthcare professionals
Period of validity:
Not specified
Approval date:
October 15, 2019
Modification date:
October 9, 2019
Year:
2026
Region / City:
Moffett Field, CA
Subject:
Microbial contamination risks in CO2 removal systems
Document Type:
Research Article
Institution:
NASA Ames Research Center
Authors:
A. Nicolas Whitlock, Pranav Jagtap, Tiago F. Costa, Jessica A. Lee, Grace A. Belancik
Target Audience:
Space mission designers, aerospace engineers, researchers in space life support systems
Period of Validity:
Ongoing research
Approval Date:
N/A
Date of Changes:
N/A
Year:
2023
Region / City:
International Space Station
Topic:
Microbial adaptation, Experimental evolution, Automation
Document Type:
Research Paper
Author:
Dhami, K. Griffis, C. Hergenradger, C. Govinda Raj, V. Singh, D. Gentry
Target Audience:
Researchers in microbial biology and space science
Period of Action:
Ongoing
Approval Date:
N/A
Modification Date:
N/A
Year:
2017
Region / City:
Buffalo Creek
Topic:
Microbial Diversity
Document Type:
Research Report
Institution:
Unspecified
Author:
Reece Theakston, Dr. Shanle
Target Audience:
Researchers, Biologists
Period of Validity:
Unspecified
Approval Date:
Unspecified
Date of Last Revision:
Unspecified
Note:
Context
Year:
Not specified
Region / Location:
Upper reaches of River Isiukhu, Kakamega County, Kenya
Geographical Coordinates:
Between 34.8372 and 0.2970 (forest) and 34.7448 and 0.2557 (downstream)
Thematic Area:
Microbial ecology; freshwater ecosystems; environmental microbiology
Type of Document:
Original Research Article
Study Design:
Cross-sectional study with random sampling
Sampling Sites:
Nine sampling points along the river
Sample Size:
54 water samples and 18 sediment samples
Methodology:
Genomic DNA extraction; 16S rRNA sequencing using Illumina MiSeq; taxonomic assignment with QIIME pipeline, RDP and Green Genes databases; data visualization using Emperor
Key Findings:
640,775 quality-filtered sequences; 1,549 OTUs; 99% bacteria and 1% archaea; 40 detected phyla dominated by Proteobacteria, Bacteroidetes, Firmicutes, and Verrucomicrobia
Environmental Context:
Areas influenced by agriculture, livestock watering, laundry, bathing, and sewage disposal
Study Focus:
Influence of anthropogenic and environmental factors on microbial assemblages
Ecosystem Type:
Tropical freshwater river system
Analytical Approach:
Targeted metagenomics based on 16S rRNA gene sequencing
Year:
2026
Region / City:
Nanjing, China
Topic:
Environmental science, Soil health
Document type:
Research article
Author:
Wenjun Xie, Zijian Qiu, Dandan Li, Zhouzhang Wang, Nan Gao, Ruonan Xiong, Adharsh Rajasekar, Xinhua He, Weishou Shen
Target audience:
Researchers in environmental science, soil health, and agriculture
Period of validity:
N/A
Date of approval:
N/A
Date of modification:
N/A
Keywords:
Pseudomonas stutzeri, organic fertilizers, N2O emission, microbial community, greenhouse, vegetable fields
Context:
This research article examines the combined impact of Pseudomonas stutzeri NRCB010 and organic fertilizers on reducing N2O emissions and altering microbial communities in greenhouse vegetable cultivation.
Year:
2026
Region / City:
Global
Subject:
Microbiology, Evolution
Document Type:
Educational Material
Organization / Institution:
Not specified
Author:
Not specified
Target Audience:
Students, Researchers, Microbiologists
Period of Action:
Not specified
Approval Date:
Not specified
Date of Changes:
Not specified
Name:
Kajal Tyagi
Document Type:
Curriculum Vitae
Profession:
Microbiologist
Field:
Microbiology and Molecular Biology
Phone:
+91-9560332941
Email:
[email protected]
LinkedIn:
https://www.linkedin.com/in/kajal-tyagi-666069190/
Education Level:
M.Sc. Microbiology
Highest Qualification Institution:
Central University of Rajasthan
Undergraduate Institution:
Shaheed Rajguru College, Delhi University
Postgraduate Degree Period:
2021–2023
Undergraduate Degree Period:
2018–2021
Current Role:
Project Associate (JRF)
Organization:
Regional Centre for Biotechnology
Work Period:
2024–2025
Region:
Delhi-NCR, India
Research Areas:
Molecular cloning, enzyme assays, microbial testing, fermentation experiments, antibiotic resistance analysis
Laboratory Techniques:
PCR, gel electrophoresis, DNA isolation, restriction digestion, cloning, SDS-PAGE, affinity chromatography, microbial culturing
Additional Expertise:
Environmental monitoring, reagent preparation, milk quality testing, aseptic techniques
Languages:
English, Hindi
Awards:
Gold Medalist in M.Sc. Microbiology
Certifications:
CSIR-NEIST Summer Research Training Program (2020); Recombinant DNA Technology Webinar Series (2020); Nucleic Acid Handling Webinar Series (2020); Food Microbiology & Food Safety SWAYAM-NPTEL (2023)
Type of document:
Supplementary material
Associated study:
Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells
Supplement file:
Supplemental File 1
Scientific field:
Microbial ecology; metatranscriptomics; bioinformatics
Research topic:
Microbial communities and metabolic activity in thiocyanate-degrading low-temperature microbial fuel cells
Authors:
Gaofeng Ni; Sebastian Canizales; Elias Broman; Domenico Simone; Viraja R. Palwai; Daniel Lundin; Margarita Lopez-Fernandez; Tom Sleutels; Mark Dopson
Affiliated institutions:
Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden; Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, The Netherlands
Correspondence:
Gaofeng Ni ([email protected]
Note:
)
Present address (Sebastian Canizales):
Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, The Netherlands
Present address (Margarita Lopez-Fernandez):
Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany
Content:
Command-line workflows, scripts, and analytical steps for metatranscriptomic data processing
Methods included:
Quality control, read filtering, phylogenetic placement of 16S rRNA reads, functional annotation, relative abundance analysis, and differential gene expression analysis
Software and tools mentioned:
FastQC; Trimmomatic; SortMeRNA; PaPaRa; RAxML-EPA; DIAMOND; MEGAN; R; edgeR; DESeq; Trinity
Data types:
Metatranscriptomic sequencing reads; 16S rRNA reads; mRNA reads
Reference databases:
SILVA rRNA databases; NCBI NR protein database; InterPro to GO database
Year:
2022
Region / City:
Zhejiang Province, China; Jiangsu Province, China
Topic:
Diabetes, Gut Microbiota, Hypoglycemic Drugs
Document Type:
Letter to the Editor
Author:
Zi-Jun Lin, Qiong-Wen Zhang, Xiao-Lan Yu, Bo Zhou, Chang-Wei Liu, Lian-Ping He
Target Audience:
Researchers, Medical Professionals
Date of Approval:
August 16, 2022
Date of Changes:
N/A
Year:
2017
Region / city:
New South Wales
Topic:
Antibiotic Resistance, Infectious Disease Control
Document Type:
Educational Resource
Institution:
NSW Education Standards Authority (NESA)
Author:
Not specified
Target Audience:
Teachers, Students
Period of Use:
Not specified
Approval Date:
Not specified
Modification Date:
Not specified
Year:
[effective date]
Region / City:
[Facility Location]
Topic:
Intravenous to Oral Antibiotic Conversion
Document Type:
Policy
Organ / Institution:
[Facility Name]
Author:
[Approving individual or committee]
Target Audience:
Clinical staff, healthcare providers
Period of Effectiveness:
[Effective date]
Approval Date:
[Approval Date]
Date of Changes:
[Date of Changes]
Year:
2021
Region/Country:
United Arab Emirates
Type of document:
Clinical guideline
Organization:
National Antimicrobial Stewardship Committee
Target population:
Adult outpatients, Adult inpatients, Pregnant women
Scope:
Empiric antibiotic management of urinary tract infections
Version:
1
Date of issue:
1 September 2021
Review period:
Every three years
Attachments:
Risk factors for complicated UTIs, Summary tables for empiric treatment, National cumulative antibiogram 2019
References:
CDC, IDSA, ESCMID, FDA standards
Note:
Year
Theme:
Acute otitis media, Antibiotic prescribing
Document Type:
Clinical Audit
Organ / Institution:
National Institute for Health and Care Excellence (NICE)
Target Audience:
Healthcare providers, clinicians
Contextual Description:
A clinical audit tool for assessing antibiotic prescribing practices for acute otitis media in children under 18 years based on NICE guidelines.
Year:
Not specified
Region / city:
Not specified
Topic:
Antibiotic use in hospital settings
Document type:
Policy
Organization / institution:
Not specified
Author:
Not specified
Target audience:
Medical staff, including junior and senior doctors, consultants
Period of validity:
Not specified
Approval date:
Not specified
Date of changes:
Not specified