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Supplementary methodological source detailing command-line procedures, scripts, and analytical steps used for processing and interpreting metatranscriptomic sequencing data from microbial fuel cell experiments.
Type of document: Supplementary material
Associated study: Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells
Supplement file: Supplemental File 1
Scientific field: Microbial ecology; metatranscriptomics; bioinformatics
Research topic: Microbial communities and metabolic activity in thiocyanate-degrading low-temperature microbial fuel cells
Authors: Gaofeng Ni; Sebastian Canizales; Elias Broman; Domenico Simone; Viraja R. Palwai; Daniel Lundin; Margarita Lopez-Fernandez; Tom Sleutels; Mark Dopson
Affiliated institutions: Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden; Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, The Netherlands
Correspondence: Gaofeng Ni ([email protected]
Note: )
Present address (Sebastian Canizales): Wetsus, European Centre of Excellence for Sustainable Water Technology, Leeuwarden, The Netherlands
Present address (Margarita Lopez-Fernandez): Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany
Content: Command-line workflows, scripts, and analytical steps for metatranscriptomic data processing
Methods included: Quality control, read filtering, phylogenetic placement of 16S rRNA reads, functional annotation, relative abundance analysis, and differential gene expression analysis
Software and tools mentioned: FastQC; Trimmomatic; SortMeRNA; PaPaRa; RAxML-EPA; DIAMOND; MEGAN; R; edgeR; DESeq; Trinity
Data types: Metatranscriptomic sequencing reads; 16S rRNA reads; mRNA reads
Reference databases: SILVA rRNA databases; NCBI NR protein database; InterPro to GO database
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Report of the Special Rapporteur on Torture and other Cruel, Inhuman or Degrading Treatment or Punishment
Year: 2020
Region / City: International
Topic: Torture, Human Rights, Psychological Torture
Document Type: Report
Body/Organization: Human Rights Council
Author: Special Rapporteur on Torture and Other Cruel, Inhuman or Degrading Treatment or Punishment
Target Audience: International policymakers, human rights organizations
Period of validity: N/A
Approval Date: 20 March 2020
Date of changes: N/A
Torture and other cruel, inhuman or degrading treatment or punishment: hostage-taking as torture
Document symbol: A/HRC/58/55
Version: Advance edited version
Distribution: General
Date: 6 February 2025
Original language: English
Organ: United Nations Human Rights Council
Session: Fifty-eighth session (24 February–4 April 2025)
Agenda item: 3 – Promotion and protection of all human rights, civil, political, economic, social and cultural rights, including the right to development
Type of document: Report
Mandate: Special Rapporteur on torture and other cruel, inhuman or degrading treatment or punishment
Author: Alice Jill Edwards
Reporting period (activities section): 15 December 2023 – 31 December 2024
Subject: Hostage-taking as torture under international law
Related legal instrument: International Convention on the Taking of Hostages
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Region / City: Armenia
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List of issues prior to submission of the eighth periodic report of Denmark under the Convention against Torture and Other Cruel, Inhuman or Degrading Treatment or Punishment, 2018
Year: 2018
Country: Denmark
Document type: Report questionnaire
Treaty: Convention against Torture and Other Cruel, Inhuman or Degrading Treatment or Punishment
Issuing body: Committee against Torture
Language: English
Scope: Implementation of articles 1–16 of the Convention
Topics covered: Incorporation of the Convention into domestic law, protection of asylum seekers, treatment of detainees, prevention of torture, gender-based violence, human trafficking, deportation procedures
Target audience: State authorities responsible for human rights compliance
Reference: CAT/C/DNK/QPR/8
Submission to inform the report of the Special Rapporteur on torture and other cruel, inhuman or degrading treatment to be presented at the 52nd Session of the Human Rights Council in March 2023 CONCERNING THE DUTY TO INVESTIGATE CRIMES OF TORTURE IN NATIONAL LAW AND PRACTICE November 2022
Year: 2022
Region / city: Global
Theme: Torture investigation, human rights
Document type: Submission
Organization / institution: DIGNITY - Danish Institute against Torture
Author: DIGNITY - Danish Institute against Torture
Target audience: Human Rights Council, law enforcement, policymakers
Period of validity: Not specified
Approval date: Not specified
Date of changes: Not specified
Topics: Metatranscriptomic Thiocyanate Degrading