№ files_lp_4_process_3_088217
File format: docx Character count: 554 File size: 688 KB
Protein sequence source detailing amino acid composition of phage gene 80 and its predicted structural homologs based on computational analysis.
Year: 2026
Organism: Phage MisoSoup
Gene: 80
Protein type: Amino acid sequence
Sequence length: 250 amino acids
Analysis method: HHPRED
Matched protein: S-adenosylmethionine synthase
Match probability: 100%
E-value: 0
Data type: Molecular biology sequence
Price: 8 / 10 USD
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Actinobacteriophage Genome Annotation Submission Cover Sheet for Phage Sorpresa
Phage name: Sorpresa
Document type: Genome annotation submission cover sheet
Scientific field: Actinobacteriophage genomics
Institution: Brigham Young University
Author: Jayden S. Longhurst
Contributor roles: Student annotator
Quality control context: SEA-PHAGES genome annotation review
Genes highlighted for review: ORF 90, ORF 68
Genome features discussed: Orphams, transposase, synteny rearrangement
Annotation tools referenced: DNA Master, PECAAN, Aragorn, BLAST, PhagesDB
Submission purpose: Quality control review of genome annotation
Source type: Academic course-related scientific documentation
Actinobacteriophage Genome Annotation Submission Cover Sheet for Phage BenchScraper
Phage name: BenchScraper
Document type: Genome annotation submission cover sheet
Subject area: Actinobacteriophage genomics
Institution: Southeastern Louisiana University
Author: Justin Anderson
Primary email: [email protected]
Correspondence email: [email protected]
Quality control process: SEA-PHAGES genome annotation QC review
Highlighted gene: Gene 53
Annotation issues noted: Integrase classification, HTH DNA-binding assignment, tRNA prediction confidence
Annotation tools mentioned: DNA Master, PECAAN, Aragorn, tRNAscan-SE
Documentation methods: PECAAN output, DNA Master shorthand, spreadsheet
External documentation link: Google Sheets annotation log
Phage Naming Rules and Guidelines
Year: 2023
Topic: Phage Naming
Document Type: Guidelines
Institution: SEA-PHAGES
Target Audience: Students, Researchers
Effective Period: Ongoing
Approval Date: Not specified
Changes Date: Not specified
8th Annual SEA-PHAGES Symposium Abstract – Phage Hunting at University of Mary Washington, 2026
Year: 2026
Institution: University of Mary Washington
Location: Fredericksburg, VA, USA
Event: 8th Annual SEA-PHAGES Symposium
Document Type: Abstract
Corresponding Faculty Member: Lynn Lewis ([email protected]
Note: )
Authors: Alexis N Robinson, Meredith D Snyder, Julia C Arrington, Rachel G Bellamy, Olivia C Blake, Robert C Byles, Samuel J Clark, Emily R Contompasis, Jacob N Ducey, Claire S Goode, Jenifer M Grove, Aidan M Hyland-Wood, Lynn O Lewis, Marion W Punches, Anna M Rinko, Sabrina L Sherman, Matthew A Tovar, Andrea G Zamora
Research Focus: Isolation and genomic characterization of Bacillus phages
Phage Hosts: Bacillus thuringiensis subsp. Kurstaki and Berliner
Number of Phages Isolated: 19
Sequenced Phages: 4
Notable Findings: Identification of Di-ildio as potentially the largest Bacillus siphovirus discovered
Phage Titering Protocol for Quantifying PFU per Milliliter
Field: Microbiology
Topic: Bacteriophage quantification
Document type: Laboratory protocol
Method: Phage titer determination
Techniques described: Full Plate Titer; Quick and Dirty Titer; Serial dilution; Spot test
Measured parameter: Plaque Forming Units per milliliter (PFU/mL)
Host organism: Mycobacterium smegmatis
Incubation temperature: 37 °C
Required materials: Agar plates; MBTA; 7H9 medium with CaCl₂; phage buffer; micropipettes; serological pipettes; incubator
Experimental components: Top agar plating mixture; phage lysate; dilution series (10⁻¹–10⁻¹⁰)
Observation method: Plaque counting on agar plates
Recommended plaque range for calculation: 20–200 plaques
Output value: Phage titer expressed in PFU/mL
Topics: MisoSoup HHPRED Phage