№ files_lp_4_process_2_58440
Year: 2021
Region / city: United Kingdom, Philippines, India, Nigeria, Colombia
Subject: Genomic pathogen surveillance and antimicrobial resistance
Document type: Supplementary Information
Institution: Centre for Genomic Pathogen Surveillance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance
Authors: Ayorinde O. Afolayan, Johan F. Bernal, June Gayeta, Melissa Masim, Varun Shamanna, Monica Abrudan, Khalil Au-Dahab, Silvia Argimon, Celia Carlos, Sonia Sia, Ravi Kumar, Iruka N. Okeke, Pilar Donado-Godoy, David M. Aanensen, Anthony Underwood
Target audience: Researchers and public health professionals in genomic surveillance
Methodologies: De novo genome assembly, mapping-based SNP phylogeny, MLST assignment, AMR determinant detection, bioinformatics workflows using Nextflow and Docker
Data sources: NCBI bacterial antimicrobial resistance reference gene database, PubMLST database, pointfinder database
Supplementary materials: Workflows, workstation specifications, figures for data cleaning, species processing, and graphical report outputs
Price: 8 / 10 USD
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