№ files_lp_3_process_7_101834
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Research methods section of an archaeological study detailing photogrammetric data acquisition, landmark-based geometric morphometric procedures, and statistical analyses used to investigate cranial base shape variation and ancestry among European populations associated with Iceland and Greenland settlements.
Section: Research
Field: Archaeology
Subfield: Geometric morphometrics
Topic: Cranial base shape and population ancestry
Authors: Kimberly A. Plomp; Keith Dobney; Hildur Gestsdóttir; Mark Collard
Corresponding authors: Kimberly A. Plomp; Mark Collard
Institutions: University of the Philippines Diliman; Simon Fraser University; University of Sydney; University of Aberdeen; Institute of Archaeology, Reykjavik
Geographical focus: Iceland; Greenland; Scandinavia; British Isles
Sample groups: Greenlandic; Scandinavian; southern British; Scottish and Irish
Methods: Photogrammetry; 3D modelling; landmark-based geometric morphometrics; Generalised Procrustes Analysis; Principal Components Analysis; Canonical Variates Analysis; Linear Discriminant Analysis; MANOVA
Software: Agisoft Metashape (2019 edition); MorphoDig; Morphologika; MorphoJ; R
Landmarks recorded: 34 cranial base and temporal bone landmarks
Data collection: XYZ coordinates recorded from 3D cranial models
Intra-observer error assessment: Repeated digitisation and Procrustes distance comparison
Analytical framework: Operational Taxonomic Units (OTUs) and comparative shape analysis
References cited: Evin et al. (2013, 2015, 2016); Harvati & Weaver (2006); Bookstein (1991); Neubauer et al. (2009, 2010); Klingenberg (2011); Slice (2007); O’Higgins & Jones (2006); Plomp et al. (2021)
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Colliding Worlds, 1450-1600: Social, Political, and Economic Interactions among Native Americans, Europeans, and Africans
Year: 1450-1600
Region: North and South America, Europe, West Africa
Subject: History, Colonial Encounters, Slavery, Trade
Document Type: Educational Textbook Chapter
Institution: America’s History textbook
Author: Not specified
Target Audience: High school or college students
Period Covered: 1450-1600
Key Themes: Indigenous societies, European exploration, Columbian Exchange, transatlantic slave trade, social hierarchies, trade networks, religion
Learning Objectives: Understanding political, economic, and social structures; analyzing impacts of cross-cultural contacts
Shared Ancestry of Jews and Palestinians: A Genetic and Historical Analysis
Year: 2020
Region / city: Levant
Topic: Genetics, History
Document type: Academic paper
Organization / institution: Various genetic studies, Biblical Archaeology Review
Author: Multiple authors
Target audience: Scholars, researchers, students
Period of validity: Not specified
Date of approval: Not specified
Date of changes: Not specified
Note: Contextual description
Prevalence of Familial Hypercholesterolaemia-Causing Variants and Impact on LDL-C Concentration in European, South Asian, and African Ancestry Groups of the UK Biobank
Authors: Jasmine Gratton; Steve E Humphries; Marta Futema
Institutions: Institute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, United Kingdom; Cardiology Research Centre, Molecular and Clinical Sciences Research Institute, St George’s University of London, London, United Kingdom
Country: United Kingdom
Data source: UK Biobank
Study design: Population-based cohort study
Subject: Prevalence of FH-causing genetic variants and association with LDL-C levels across ancestry groups
Population: European, South Asian, and African ancestry participants
Sample size: 140,439 European; 4,067 South Asian; 3,906 African participants with lipid and whole exome sequencing data
Genes analysed: LDLR; APOB; PCSK9
Methods: Principal component analysis; whole exome sequencing; variant classification using ACMG guidelines
Outcome measures: Prevalence of pathogenic and likely pathogenic FH variants; LDL-C concentration adjusted for statin use; prevalence and incidence of coronary heart disease
Period of data collection: 2006–2010
Ethical approval: Conducted under approved UK Biobank application 40721
Type of document: Scientific research article
Supplementary Table 1. Rare germline pathogenic, likely pathogenic, or deleterious (P/LP/D) variants (n=51) in BRCA2, ATM, NBN, and PALB2 identified among men of African ancestry.
Note: Gene
Year: 2020
Region / city: Not specified
Topic: Genetic variants, Germline mutations
Document type: Supplementary Table
Author: Matejcic et al
Target audience: Researchers in genetics, oncology
Period of validity: Not specified
Approval date: Not specified
Modification date: Not specified
Robert HYDE of Hyde’s Coffee Shop and the Ancestry of Rev. William JACKSON
Year: 1795
Location: Dublin, Ireland
Subject: History of Hyde’s Coffee Shop and the Jackson Family
Document Type: Historical account / genealogical notes
Author: Richard Jackson
Related Individuals: Rev. William JACKSON, Robert HYDE, Luke NAYLOR, Anne FARRELL, Dr. Richard JACKSON
Historical Events: Arrest of Rev. William JACKSON for treason, establishment of Hyde’s Coffee Shop
Primary Sources: Newspaper advertisements, leases, historical records
Publication Year: 2019–2023
Period Covered: 1749–1795
Purpose: Documenting family connections and the establishment of Hyde’s Coffee Shop
Topics: geometric-morphometric Europeans Ancestry