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This document provides a bioinformatics tutorial on exploring the relationship between gene sequence, protein structure, and biological function using the Green Fluorescent Protein as a model.
Year:
2023
Note:
Region / City
Theme:
Bioinformatics, Green Fluorescent Protein
Document Type:
Tutorial
Organization:
RCSB PDB
Target Audience:
Researchers, Educators, Students in Biochemistry, Molecular Biology
Price: 8 / 10 USD
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The product description is provided for reference. Actual content and formatting may differ slightly.
Year:
2023
Region / City:
Taipei, Taiwan
Subject:
Organic Light-Emitting Diodes, Photonics
Document Type:
Research Paper
Organization:
National Taiwan University, Yuan Ze University
Author:
Chia-Hsun Chen, Pei-Hsi Lee, Hung-Yi Lin, Bo-Yen Lin, Man-kit Leung, Tien-Lung Chiu, Jiun-Haw Lee
Target Audience:
Researchers in Photonics and Optoelectronics
Date Approved:
Not specified
Date of Last Change:
Not specified
Period of Validity:
Not specified
Context:
A research paper presenting detailed supplementary information on the performance and characteristics of organic light-emitting diodes, with a focus on triplet-triplet fusion and photonic materials.
Year:
2018
Region / City:
Unknown
Topic:
Material certification for Zyglo ZL-37 Fluorescent Penetrant
Document Type:
Certificate of Compliance
Organization:
Magnaflux (A Division of ITW Ltd)
Author:
Authorized Employee, Quality Assurance Manager
Target Audience:
Industry professionals, inspectors, and manufacturers
Effective Period:
From 19/10/2018
Approval Date:
19/10/2018
Modification Date:
Not specified
Year:
2012
Revision date:
01/01/2025
Related update:
May 2018
Subject:
Vascular Imaging
HCPCS code:
C9733
Procedure name:
Non-ophthalmic fluorescent vascular angiography
Type of document:
Guideline note and coverage determination record
Organ / institution:
HERC
Source materials:
December 2012 VbBS meeting materials and minutes
Regulatory reference:
FDA approval for specified surgical uses
Associated device:
LifeCell/Novadaq SPY Elite System
Clinical context:
Coronary artery bypass and other vascular surgeries
Related organization cited:
American Heart Association
Recommendation status:
Excluded List
Evidence classification:
Experimental
Year:
Not specified
Field:
Biomedical Engineering; Computational Biology; Medical Image Analysis
Topic:
Nuclei segmentation in fluorescent microscopy images
Document type:
Scientific dataset description and research article
Dataset name:
Breast Mammary Gland Dataset (BMGD)
Authors:
Zabina Tasneem; Jinwei Fan; Aishwarya Shrestha; Joy Zhao; Qingsu Cheng
Affiliated institutions:
University of Wisconsin-Milwaukee; Whitefish Bay High School
Corresponding author:
Qingsu Cheng
Corresponding author email:
[email protected]
Geographical affiliation:
Milwaukee, Wisconsin, United States
Imaging method:
Confocal fluorescent microscopy
Microscope model:
Zeiss LSM 710 confocal microscope
Objective lens:
Zeiss Apochromat 40X/1.1 water-immersion objective
Dataset size:
819 image patches
Annotated objects:
More than 9,500 manually segmented cell nuclei
Image type:
DAPI-stained fluorescent images of mammary organoids
Image resolution:
12-bit images
Voxel size:
0.25 µm × 0.25 µm × 1 µm
Data format:
Laser Scanning Microscope (.lsm) files
Annotation tool:
Labkit extension within the FIJI platform
Annotation effort:
More than 800 hours of manual labeling
Biological material:
Mammary epithelial cell cultures
Experimental condition:
Cultures exposed to different microenvironmental stiffness conditions
Primary research use:
Development and evaluation of machine learning and deep learning nuclei segmentation algorithms
Related research area:
Breast cancer cellular response analysis
Year:
2025
Region / City:
Canada
Topic:
Bioinformatics Education and Training
Document Type:
Workshop Proposal Form
Organization:
Canadian Bioinformatics.ca
Authors:
Nia Hughes, Michelle Brazas
Target Audience:
Researchers, post-doctoral fellows, graduate students, and professionals in bioinformatics and life sciences
Period of Validity:
November 14, 2025
Approval Date:
October 31, 2025
Date of Revisions:
October 31, 2025
Year:
N/A
Region / City:
University of Pennsylvania, Philadelphia
Theme:
Bioinformatics, Computational Resources
Document Type:
Research Resources Report
Institution / Organization:
University of Pennsylvania
Author:
Andrea Stout, Tapan Ganguly
Target Audience:
Researchers, Scientific Community
Period of Action:
N/A
Approval Date:
N/A
Date of Changes:
N/A
Year:
2025
Region / City:
Canada, Edmonton, Vancouver
Topic:
RNA-seq, Bioinformatics
Document Type:
Proposal
Organization:
Canadian Bioinformatics Workshop
Author:
Jane Doe, Guy Manderson, Demo Gorgon
Target Audience:
Advanced undergraduates, graduates, postgraduates, and PIs working or about to embark on RNA-seq analysis
Period of Validity:
2025–2026
Approval Date:
October 31, 2025
Date of Changes:
October 31, 2025
Institution:
IBGC, UMR 5095 CNRS
Team:
Bioinformatics team
Supervisors:
Dr. Macha Nikolski; Dr. Thomas Daubon
Position type:
Post-doctoral position
Duration:
12 months, extendable
Field:
Bioinformatics; Single-cell RNA sequencing; Glioblastoma research
Research focus:
White matter tract invasion in glioblastoma
Techniques:
Single-cell RNA sequencing; Bulk transcriptomics; NGS data analysis
Programming requirements:
R; Python; Unix environment
Language requirement:
English (spoken and written)
Required qualification:
PhD degree in bioinformatics, high level engineer or equivalent
Project context:
Integration of multiple scRNA-seq datasets from published and newly generated glioblastoma models
Subject area:
Molecular and metabolic pathways involved in tumor invasion
Year:
2003
Departments involved:
Mathematics and Statistics, Biology, Computer and Information Science
Target Audience:
Undergraduate and graduate students
Course Duration:
15 weeks
Class Structure:
Two 75-minute hybrid lectures/labs per week
Enrollment Size:
12-20 students
Course Type:
Interdisciplinary, team-taught
Institution:
Minnesota State University, Mankato
Course Credits:
3 credits per department
Course Website:
https://d2l.mnsu.edu/
Semester:
Spring
Course Focus:
Bioinformatics research
Materials Used:
R, Bioconductor, Orange, Weka, CLC Free Workbench, BioEdit, ClustalX, TreeV32, Cn3D, NCBI, BioCyc, ExPASy
Teaching Approach:
Problem-solving seminar, interdisciplinary teamwork
Faculty Team:
Three instructors, one from each department
Course Outcome:
Group research projects and presentations
Year:
2025
Region / City:
Bucharest
Theme:
Bioinformatics, Genomics
Document Type:
Conference Announcement
Organization:
University of Bucharest, UEFISCDI, EEA and Norway Grants
Author:
University of Bucharest, Faculty of Biology
Target Audience:
Bioinformatics researchers, professionals, students, early-career researchers, data scientists, computational biologists, healthcare and pharmaceutical industry experts, policymakers, ethicists
Period of Action:
April 2-4, 2025
Approval Date:
N/A
Date of Changes:
N/A
Year of completion:
2023
Field:
Cancer research and tumor immunology
Research focus:
PPP2R2A deletion and expression in NSCLC and immunotherapy response
Type of document:
Supplementary materials and methods section of a scientific study
Data sources:
cBioPortal Pan-Lung cancer dataset; TCGA pan-cancer RNA-Seq data via Xena Browser; Kmplot survival database
Cell lines:
A549 cells; CMT167 PPP2R2A heterozygous knockout cells
Animal models:
CD11b-DTR mice (Jackson Laboratory, strain 006000); C57BL6 mice
Experimental techniques:
RNA sequencing; Gene Set Enrichment Analysis (GSEA); glycosylation assays with PNGase F and Endo H; adoptive Treg transfer; flow cytometry; Treg suppression assay with CellTrace Violet; ELISA
Repositories:
NCBI GEO (accession number GSE311238)
Analytes:
PD-L1, TNF-α, IFN-γ, IFN-α, IFN-β
Antibodies and reagents:
Anti-Mouse PD-L1 In Vivo Antibody (Clone 10F.9G2, Ichorbio); reagents from BioLegend, STEMCELL Technologies, eBioscience, R&D Systems, PBL Assay Science
Cited works:
Gyorffy B., 2024, Innovation (Camb); Qiu Z. et al., 2020, Cancer Research; Zhou L. et al., 2024, Journal of Clinical Investigation
Year:
2000-2014
Region / City:
United States
Topic:
Bioinformatics, IT, Software Engineering
Document Type:
Job Description
Institution:
Institute of Genome Science
Author:
Not specified
Target Audience:
Prospective Job Applicants
Period of Validity:
Indefinite
Approval Date:
Not specified
Date of Changes:
Not specified
Year:
2022
Subject:
Structural Bioinformatics
Document Type:
Midterm Exam
Institution:
ECS
Target Audience:
Students
Duration:
45 minutes
Number of Questions:
10
Total Points:
90
Language:
English
Date of Exam:
February 10, 2022
Date of Creation:
February 10, 2022
Note:
Contextual Description
Year:
2023
Region / City:
Nanjing, Jiangsu, China
Subject:
Bioinformatics, Circular RNA, Human Blood, RNA-seq
Document Type:
Research Article
Institution:
Nanjing University of Chinese Medicine
Author:
Shaoxun Yuan, Xue Bai, Linwei Li, Wanjun Gu
Target Audience:
Researchers in Bioinformatics and RNA Analysis
Duration:
Ongoing
Approval Date:
N/A
Modification Date:
N/A
Year:
2024
Region / city:
n/a
Topic:
Structural Bioinformatics, DNA/RNA sequences, protein alignment
Document type:
Exam solutions
Institution:
n/a
Author:
n/a
Target audience:
Students in Structural Bioinformatics
Validity period:
n/a
Approval date:
n/a
Modification date:
n/a
Context description:
Exam solutions for ECS 129, covering dynamic programming, DNA sequence alignment, and protein translation.
Note:
Year
Institution:
University of Milan
Department:
Department of Biosciences, Bioinformatics for Computational Genomics (F4B)
Type of document:
Thesis approval form
Thesis project extension:
Yes/No
Year:
2026
Institution:
Centre for Virus Research, University of Glasgow
Document type:
Support request form
Topic:
Virology, sequencing, bioinformatics
Author/Contact:
Andrew Davison
Intended audience:
CVR staff and collaborating researchers
Applications:
Sample sequencing, bioinformatic analyses, pipeline development
Platforms:
Illumina MiSeq, Ion Torrent RNASeq
Submission method:
Email
Information requested:
Research aims, sample details, participation preferences, data format and analysis requirements
Year:
2021
Region / City:
Princeton
Theme:
Biology, Protein Synthesis, Genetics
Document Type:
Lesson Plan
Institution:
Princeton High School
Authors:
Emily Leitnick & Arionne Smith
Target Audience:
High School Students (Biology Class)
Duration:
10 days
Date of Approval:
8/9/21
Date of Revisions:
Not specified
Period of Validity:
Second Six Weeks Period
Year:
2024
Region / City:
Northern Ireland
Topic:
Agriculture, Payment Schemes, Farming
Document Type:
Guide
Organization / Institution:
Department of Agriculture, Environment and Rural Affairs (DAERA)
Author:
Department of Agriculture, Environment and Rural Affairs
Target Audience:
Farmers, Agricultural Businesses
Period of Validity:
2024
Date of Approval:
Not specified
Date of Amendments:
Not specified