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This is a proposal form for organizing workshops in bioinformatics, detailing course structure, logistics, objectives, and audience targeting.
Year:
2025
Region / City:
Canada
Topic:
Bioinformatics Education and Training
Document Type:
Workshop Proposal Form
Organization:
Canadian Bioinformatics.ca
Authors:
Nia Hughes, Michelle Brazas
Target Audience:
Researchers, post-doctoral fellows, graduate students, and professionals in bioinformatics and life sciences
Period of Validity:
November 14, 2025
Approval Date:
October 31, 2025
Date of Revisions:
October 31, 2025
Price: 8 / 10 USD
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Year:
2025
Region / City:
Canada, Edmonton, Vancouver
Topic:
RNA-seq, Bioinformatics
Document Type:
Proposal
Organization:
Canadian Bioinformatics Workshop
Author:
Jane Doe, Guy Manderson, Demo Gorgon
Target Audience:
Advanced undergraduates, graduates, postgraduates, and PIs working or about to embark on RNA-seq analysis
Period of Validity:
2025–2026
Approval Date:
October 31, 2025
Date of Changes:
October 31, 2025
Year:
2023
Note:
Region / City
Theme:
Bioinformatics, Green Fluorescent Protein
Document Type:
Tutorial
Organization:
RCSB PDB
Target Audience:
Researchers, Educators, Students in Biochemistry, Molecular Biology
Year:
N/A
Region / City:
University of Pennsylvania, Philadelphia
Theme:
Bioinformatics, Computational Resources
Document Type:
Research Resources Report
Institution / Organization:
University of Pennsylvania
Author:
Andrea Stout, Tapan Ganguly
Target Audience:
Researchers, Scientific Community
Period of Action:
N/A
Approval Date:
N/A
Date of Changes:
N/A
Year:
2025
Region / City:
Canada, Edmonton, Vancouver
Topic:
RNA-seq, Bioinformatics
Document Type:
Proposal
Organization:
Canadian Bioinformatics Workshop
Author:
Jane Doe, Guy Manderson, Demo Gorgon
Target Audience:
Advanced undergraduates, graduates, postgraduates, and PIs working or about to embark on RNA-seq analysis
Period of Validity:
2025–2026
Approval Date:
October 31, 2025
Date of Changes:
October 31, 2025
Institution:
IBGC, UMR 5095 CNRS
Team:
Bioinformatics team
Supervisors:
Dr. Macha Nikolski; Dr. Thomas Daubon
Position type:
Post-doctoral position
Duration:
12 months, extendable
Field:
Bioinformatics; Single-cell RNA sequencing; Glioblastoma research
Research focus:
White matter tract invasion in glioblastoma
Techniques:
Single-cell RNA sequencing; Bulk transcriptomics; NGS data analysis
Programming requirements:
R; Python; Unix environment
Language requirement:
English (spoken and written)
Required qualification:
PhD degree in bioinformatics, high level engineer or equivalent
Project context:
Integration of multiple scRNA-seq datasets from published and newly generated glioblastoma models
Subject area:
Molecular and metabolic pathways involved in tumor invasion
Year:
2003
Departments involved:
Mathematics and Statistics, Biology, Computer and Information Science
Target Audience:
Undergraduate and graduate students
Course Duration:
15 weeks
Class Structure:
Two 75-minute hybrid lectures/labs per week
Enrollment Size:
12-20 students
Course Type:
Interdisciplinary, team-taught
Institution:
Minnesota State University, Mankato
Course Credits:
3 credits per department
Course Website:
https://d2l.mnsu.edu/
Semester:
Spring
Course Focus:
Bioinformatics research
Materials Used:
R, Bioconductor, Orange, Weka, CLC Free Workbench, BioEdit, ClustalX, TreeV32, Cn3D, NCBI, BioCyc, ExPASy
Teaching Approach:
Problem-solving seminar, interdisciplinary teamwork
Faculty Team:
Three instructors, one from each department
Course Outcome:
Group research projects and presentations
Year:
2025
Region / City:
Bucharest
Theme:
Bioinformatics, Genomics
Document Type:
Conference Announcement
Organization:
University of Bucharest, UEFISCDI, EEA and Norway Grants
Author:
University of Bucharest, Faculty of Biology
Target Audience:
Bioinformatics researchers, professionals, students, early-career researchers, data scientists, computational biologists, healthcare and pharmaceutical industry experts, policymakers, ethicists
Period of Action:
April 2-4, 2025
Approval Date:
N/A
Date of Changes:
N/A
Year of completion:
2023
Field:
Cancer research and tumor immunology
Research focus:
PPP2R2A deletion and expression in NSCLC and immunotherapy response
Type of document:
Supplementary materials and methods section of a scientific study
Data sources:
cBioPortal Pan-Lung cancer dataset; TCGA pan-cancer RNA-Seq data via Xena Browser; Kmplot survival database
Cell lines:
A549 cells; CMT167 PPP2R2A heterozygous knockout cells
Animal models:
CD11b-DTR mice (Jackson Laboratory, strain 006000); C57BL6 mice
Experimental techniques:
RNA sequencing; Gene Set Enrichment Analysis (GSEA); glycosylation assays with PNGase F and Endo H; adoptive Treg transfer; flow cytometry; Treg suppression assay with CellTrace Violet; ELISA
Repositories:
NCBI GEO (accession number GSE311238)
Analytes:
PD-L1, TNF-α, IFN-γ, IFN-α, IFN-β
Antibodies and reagents:
Anti-Mouse PD-L1 In Vivo Antibody (Clone 10F.9G2, Ichorbio); reagents from BioLegend, STEMCELL Technologies, eBioscience, R&D Systems, PBL Assay Science
Cited works:
Gyorffy B., 2024, Innovation (Camb); Qiu Z. et al., 2020, Cancer Research; Zhou L. et al., 2024, Journal of Clinical Investigation
Year:
2000-2014
Region / City:
United States
Topic:
Bioinformatics, IT, Software Engineering
Document Type:
Job Description
Institution:
Institute of Genome Science
Author:
Not specified
Target Audience:
Prospective Job Applicants
Period of Validity:
Indefinite
Approval Date:
Not specified
Date of Changes:
Not specified
Year:
2022
Subject:
Structural Bioinformatics
Document Type:
Midterm Exam
Institution:
ECS
Target Audience:
Students
Duration:
45 minutes
Number of Questions:
10
Total Points:
90
Language:
English
Date of Exam:
February 10, 2022
Date of Creation:
February 10, 2022
Note:
Contextual Description
Year:
2023
Region / City:
Nanjing, Jiangsu, China
Subject:
Bioinformatics, Circular RNA, Human Blood, RNA-seq
Document Type:
Research Article
Institution:
Nanjing University of Chinese Medicine
Author:
Shaoxun Yuan, Xue Bai, Linwei Li, Wanjun Gu
Target Audience:
Researchers in Bioinformatics and RNA Analysis
Duration:
Ongoing
Approval Date:
N/A
Modification Date:
N/A
Year:
2024
Region / city:
n/a
Topic:
Structural Bioinformatics, DNA/RNA sequences, protein alignment
Document type:
Exam solutions
Institution:
n/a
Author:
n/a
Target audience:
Students in Structural Bioinformatics
Validity period:
n/a
Approval date:
n/a
Modification date:
n/a
Context description:
Exam solutions for ECS 129, covering dynamic programming, DNA sequence alignment, and protein translation.
Note:
Year
Institution:
University of Milan
Department:
Department of Biosciences, Bioinformatics for Computational Genomics (F4B)
Type of document:
Thesis approval form
Thesis project extension:
Yes/No
Year:
2026
Institution:
Centre for Virus Research, University of Glasgow
Document type:
Support request form
Topic:
Virology, sequencing, bioinformatics
Author/Contact:
Andrew Davison
Intended audience:
CVR staff and collaborating researchers
Applications:
Sample sequencing, bioinformatic analyses, pipeline development
Platforms:
Illumina MiSeq, Ion Torrent RNASeq
Submission method:
Email
Information requested:
Research aims, sample details, participation preferences, data format and analysis requirements
Year:
2025
Region / City:
Manitoba, Canada
Subject:
Union Bylaws
Document Type:
Bylaws
Organization / Institution:
Canadian Union of Public Employees (CUPE) Local 3473
Author:
Not specified
Target Audience:
Union members
Period of Validity:
Indefinite
Approval Date:
June 19, 2025
Date of Amendments:
Not specified
Year:
2023
Region / City:
United Nations
Topic:
Chemicals, Classification, Hazardous Materials
Document Type:
Working Document
Organization / Institution:
United Nations Sub-Committee of Experts on the Globally Harmonized System of Classification and Labelling of Chemicals
Author:
United Nations
Target Audience:
Stakeholders in Canada
Period of validity:
July 10 – 12, 2023
Approval Date:
June 1, 2023
Date of Changes:
N/A
Contextual Description:
A working document listing summaries of proposals and discussions for the 44th session of the UN Sub-Committee of Experts on the Globally Harmonized System of Classification and Labelling of Chemicals, specifically for Canadian stakeholders.
Year:
2015
Region / City:
Canadian County, Oklahoma
Topic:
Juvenile Justice, Probation Services, Behavioral Health
Document Type:
Annual Report
Organization / Institution:
Gary E. Miller Canadian County Children’s Justice Center
Author:
Gary E. Miller Canadian County Children’s Justice Center
Target Audience:
Local government officials, Juvenile justice professionals, Community stakeholders
Period of Action:
July 1, 2014 – June 30, 2015
Approval Date:
Not specified
Date of Changes:
Not specified
Year:
2023
Region / City:
Northern Canadian Cordillera
Topic:
Seismology, Geophysics
Document Type:
Research Article
Author:
Derek L. Schutt, Robert W. Porritt, Clément Estève, Pascal Audet, Jeremy Gosselin, Andrew Schaeffer, Richard C. Aster, Jeffrey T. Freymueller, Joel F. Cubley
Target Audience:
Geophysicists, Seismologists, Researchers in Earth Sciences
Period of Validity:
Not specified
Approval Date:
Not specified
Date of Changes:
Not specified
Year:
2025
Region / City:
Canada, Edmonton, Vancouver
Topic:
RNA-seq, Bioinformatics
Document Type:
Proposal
Organization:
Canadian Bioinformatics Workshop
Author:
Jane Doe, Guy Manderson, Demo Gorgon
Target Audience:
Advanced undergraduates, graduates, postgraduates, and PIs working or about to embark on RNA-seq analysis
Period of Validity:
2025–2026
Approval Date:
October 31, 2025
Date of Changes:
October 31, 2025