№ files_lp_4_process_3_133430
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Supplementary scientific material presenting genomic network visualizations, phylogenetic trees, prophage comparisons, and pangenome distribution analyses for Salmonella Hadar isolates collected between 2016 and 2023 from surveillance datasets and international genome repositories.
Year range: 2016–2023
Subject: Genomic epidemiology of Salmonella Hadar
Document type: Supplementary scientific material
Associated material: Supplementary figures and supplementary file
Data sources: NARMS surveillance sequencing (CDC, FDA, FSIS) and Enterobase datasets
Geographic coverage: United States and international datasets (including U.K. and France)
Analytical methods: Jaccard Index network analysis, phylogenetic analysis, pangenome analysis, genomic alignment, SNP-based maximum likelihood trees
Software and tools referenced: Easyfig, Geneious Prime, Roary
Biological focus: Salmonella Hadar genomes, plasmids, prophage elements, antimicrobial resistance genes
Variables analyzed: Sequence type, plasmid replicons, antibiotic resistance genes, prophage occurrence, genome relatedness, gene frequency distribution
Datasets described: U.S., non-U.S., U.K., and France Salmonella Hadar genome collections
Supplementary components: Eleven supplementary figures and one supplementary data file containing pancontigs and gene sequences
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