№ files_lp_4_process_3_136924
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Supplementary scientific material presenting phylogenetic trees, primer sequences, BLAST alignment summaries, and sequence alignments related to molecular analyses of parabasalia and trichomonad lineages using 18S rRNA and ITS genetic markers.
Year: 2015
Field: Molecular biology; microbiology; phylogenetics
Subject: Parabasalia and trichomonad phylogeny based on rRNA loci
Document type: Supplementary scientific material
Content elements: Phylogenetic trees; primer table; BLAST alignment results; sequence alignments
Methods: Maximum likelihood phylogenetic analysis; BLAST sequence comparison
Genetic markers: 18S rRNA; ITS1-5.8S rRNA-ITS2
Organisms studied: Tetratrichomonas spp.; parabasalia; trichomonads
Host organisms mentioned: Cattle (bovine hosts)
Data sources: GenBank sequence accessions; cattle gastrointestinal metatranscriptome datasets
Figures: Figure S1; Figure S2
Tables: Table S1; Table S2
Supplementary files: S1–S4 sequence alignments
Primer information: Oligonucleotide primers with forward and reverse sequences
Key references cited: Hadziavdic et al. (2014); Malik et al. (2011); Cepicka et al. (2010); Benson et al. (2015)
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